On Race, Genetics, and Pseudoscience

How do scientists talk about race? For quite some time a small group of geneticists have been engaged in deep conversations about how best to convey the complexities of, and the relationship between race, DNA, and human variation to the general public. We come from different backgrounds—Ewan is the director of the European Bioinformatics Institute, Adam is a geneticist and science writer, Aylwyn is a human evolutionary geneticist, and I am an anthropological geneticist—and nationalities, but are united in our agreement that patterns of human genetic variation do not support the biological division of people into races.

Over the course of a year, we worked together on a statement that best reflects our consensus view of human genetic variation, race, and even the fraught topic of race and IQ. We wanted to correct the misconceptions that many people have about these topics, and directly confront a number of untrue ideas promoted by a small group of pseudo-scientists who refer to themselves as “race realists” or proponents of “human biological diversity” (HBD).

The result is a (rather lengthy) statement which Ewan has posted in its entirety here. I want to summarize its main points here with excerpts, but I encourage everyone to go read the whole thing. We intend for this statement to contribute to the ongoing conversation between scientists, social scientists, scholars in the humanities, the media, and the public.

(Also please note that I kept the original British spellings in excerpts that I quoted from the statement).

The biological race concept emerges from a particular history

Research in the 20th century found that the crude categorisations used colloquially (black, white, East Asian etc.) were not reflected in actual patterns of genetic variation, meaning that differences and similarities in DNA between people did not perfectly match the traditional racial terms. The conclusion drawn from this observation is that race is therefore a socially constructed system, where we effectively agree on these terms, rather than their existing as essential or objective biological categories.

Describing race as a social construct does not undermine its existence, nor its importance; it merely points out that there is no fundamental biological basis for race.

Human population structure is not race

Some people claim that the exquisitely detailed picture of human variation that we can now obtain by sequencing whole genomes contradicts this. Recent studies, they argue, actually show that the older notions of races as biological categories (some dating back to the 18th century) were basically correct in the first place. As evidence for this they often point to the images produced by analyses in studies that seem to show natural clustering of humans into broadly continental groups based on their DNA. But these claims misinterpret and misrepresent the methods and results of this type of research. Populations do show both genetic and physical differences, but the analyses that are cited as evidence for the concept of race as a biological category actually undermine it.

Geneticists use a variety of tools to visualise the subtle and complex patterns of genetic variation between people, and to mathematically cluster them together based on relatedness. Such methods are helpful for exploring data, but have also been the source of wider confusion. For example, Principal Component Analysis (PCA) plots often show distinct, colourful clusters of dots that appear to separate groups of people from different parts of the world. In some cases, these clusters even seem to correspond to traditional racial groupings (e.g. ‘Africans’, ‘Europeans’ and ‘Asians’). It is images such as these which are often deployed as genetic evidence for the existence of separate races. But these methods can be misleading in ways which non-experts – and even some specialists – are unaware of. For example, some of the observed genetic clustering is a reflection of the samples that were included in the study and how they were collected, rather than any inherent genetic structure. DNA sample collection typically follows existing cultural, anthropological or political groupings. If samples are collected based on pre-defined groupings, it’s entirely unsurprising that the analyses of these samples will return results that identify such groupings. This does not tell us that such taxonomies are inherent in human biology.

Traits, IQ, and genetic diversity

‘Human biodiversity’ proponents sometimes assert that alleged differences in the mean value of IQ when measured in different populations – such as the claim that IQ in some sub-Saharan African countries is measurably lower than in European countries – are caused by genetic variation, and thus are inherent. The purported genetic differences involved are usually attributed to recent natural selection and adaptation to different environments or conditions. Often there are associated stories about the causes of this selection, for example that early humans outside Africa faced a more challenging struggle for survival, or that via historical persecution and restriction of professional endeavours, Ashkenazi Jews harbour genes selected for intellectual and financial success.

Such tales, and the claims about the genetic basis for population differences, are not scientifically supported. In reality for most traits, including IQ, it is not only unclear that genetic variation explains differences between populations, it is also unlikely. To understand why requires a bit of background.

(Most genome-wide association studies for detecting variants associated with complex traits such as IQ, known as GWAS) have been carried out in populations sampled from across Europe, and have ancestries consistent with this sampling. In many cases though, only certain subsets of people are included in these analyses – for good scientific reasons. For example, samples of “European” populations used in genetic studies often have excluded up to as many as 30% of self-identified Europeans. This is because some individuals introduce hard-to-model complications into the data, forming distinct sub-clusters or complicating the genetic model. For example, Finns and Sardinians are often excluded as they have quite distinct genetic ancestries compared to many other Europeans, as are some people in India, north Africa, Latino/Hispanics, and many individuals with complex ancestries, despite confident self-identification within their ethnic group. Researchers therefore often exclude them from the set of people used in a particular GWAS analyses, on the basis that their unique population histories can invalidate the statistical models used in these techniques.

This, in turn, can confuse people who read the studies and observe distinct and seemingly ‘natural’ population clusters emerge. If they aren’t familiar with the practice of removing these individuals with more complex ancestries (or don’t read the detailed methods, which are often tucked away in elusive supplementary sections of a published paper), they could easily be misled into thinking that the populations in these analyses are much more distinct than they are in reality. The resulting biases are poorly understood, and the terminology involved can be confusing to non-specialists. Furthermore, while it is clear to GWAS researchers that the results of their analyses tend to be specific to the population studied and their predictions cannot be reliably extended to other populations with very different ancestry, this is not widely recognised or understood by non-specialists.

IQ scores are heritable: that is, within populations, genetic variation is related to variation in the trait. But a fundamental truism about heritability is that it tells us nothing about differences between groups. Even analyses that have tried to calculate the proportion of the difference between people in different countries for a much more straightforward trait (height) have faced scientific criticisms. Simply put, nobody has yet developed techniques that can bypass the genetic clustering and removal of people that do not fit the statistical model mentioned above, while simultaneously taking into account all the differences in language, income, nutrition, education, environment, and culture that may themselves be the cause of differences in any trait observed between different groups. This applies to any trait you could care to look at – height, specific behaviours, disease susceptibility, intelligence.

Not only that, the genetic knowledge we gain from studying our mainly-European pools of participants becomes highly unreliable when it is applied to those with different ancestries. Although it is a common trope to argue that we will have the answer to the question of the genetic basis of group differences in traits “in the next five years”, or “in the next decade”, the advances in genomics reveal that the question is far more complex than we could have imagined, even just a few years ago. Consequently, anyone who tells you that there’s good evidence on how much genetics explain group differences (rather than individual differences) is fooling you – or fooling themselves.

However, there are some strong hints towards the answer. The genetic variants that are most strongly associated with IQ in Europeans are no more population-specific than any other trait. To put it bluntly, the same genetic variants associated with purportedly higher IQ in Europeans are also present in Africans, and have not emerged, or been obviously selected for, in recent evolutionary history outside Africa. Moreover, since it is a complex trait, the genetic variation related to IQ is broadly distributed across the genome, rather than being clustered around a few spots, as is the nature of the variation responsible for skin pigmentation. These very different patterns for these two traits mean that the genes responsible for determining skin pigmentation cannot be meaningfully associated with the genes currently known to be linked to IQ. These observations alone rule out some of the cruder racial narratives about the genetics of intelligence: it is virtually inconceivable that the primary determinant of racial categories – that is skin colour – is strongly associated with the genetic architecture that relates to intelligence. 

Finally, multiple lines of evidence indicate that there are complex environmental effects (as might reasonably be expected) on measures of IQ and educational attainment. Many socioeconomic and cultural factors are entangled with ancestry in the countries where these studies are often performed – particularly in the USA, where structural racism has historically and continues to hugely contribute to economic and social disparities. We cannot use populations in these countries to help answer the question of why IQ scores are claimed to be lower in other countries with entirely different social, economic, and cultural histories, nor to answer the role of genetics for alleged differences in IQ measures between groups inside a country with strong societal differences linked to ancestry (for example, the USA). Thus, confident assertions that current GWAS show us that ‘race’ is associated with cognitive function are simply wrong. It is our contention that any apparent population differences in IQ scores are more easily explained by cultural and environmental factors than they are by genetics.

The history of our species is complex and convoluted, and our genomes reflect that. As we delve deeper into the DNA of the people of the world, the science of genetics becomes even more complex too. But we see no scientifically sound evidence that contemporary genetics can be used to recapitulate biological or historical concepts for race. It is our duty and wish that this understanding is spread far and wide.

Ewan Birney

European Molecular Biology Laboratory, European Bioinformatics Institute

Jennifer Raff

Department of Anthropology, University of Kansas.

Adam Rutherford

Genetics, Evolution & Environment, University College London

Aylwyn Scally

Department of Genetics, University of Cambridge

The authors wish to thank Stuart Ritchie for his valuable contributions to our discussion.

**Note: comments for this post are not enabled**

Genetic mythologies: “Nephilim DNA” from the Paracas skulls

As longtime readers here know, I’m endlessly fascinated by the ways in which people attempt to misuse genetics to legitimize pseudoscientific ideas.

Today I’m going to write about one example which I’ve been meaning to address for some time: pseudoscientific claims about the genetic distinctiveness of the Paracas peoples. (Please note that I don’t usually show images of Native American remains on this blog, but there was no other way to illustrate the details of this issue. Under the cut is an embedded video of the unwrapping of a Paracas mummy, as well as a photo with the mummy under its wrappings.)

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Archaeological Fantasies and the genetic history of the Americas

The excellent podcast Archaeological Fantasies recently had me on as a guest for a wide ranging discussion on genetics. We covered everything from the genetic prehistory of the Americas to issues surrounding ancestry testing companies. Here’s a link to the episode (apologies for the fact that I kept cutting in and out–apparently our university wireless connection isn’t very good).

Since so much of our discussion focused on haplogroup X2a and models for ancient American prehistory, I decided to break from the normal tradition here at VM and actually re-publish a post to make it easier for people to get answers to any questions they might have. And if you have specific questions about content from the podcast, please feel free to leave them in the comments on this post.

This post was originally published last year to address some questions that Deborah Bolnick and I were getting about our paper “Does Mitochondrial Haplogroup X Indicate Ancient Trans-Atlantic Migration to the Americas? A Critical Re-Evaluation.”  I’ve edited it slightly to reflect the fact that the paper itself is now open access, and you should be able to download it here or at my academia.edu page. (I’m actually really shocked at the number of downloads it’s gotten…apparently this is a topic that a lot of people find interesting!).

As soon as my syllabi for the upcoming semester are finished, I will try to write up another post that summarizes recent findings in North American anthropological genetics, and what they mean for our understanding of the initial peopling of the Americas. In the meantime, if you’re interested in ancient DNA I highly recommend you get up to speed on some of the methods by reading this post.

 

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Responses to some questions about our recently published paper on haplogroup X and North American prehistory

Just a few days ago, my co-author Deborah Bolnick and I published a paper in the journal PaleoAmerica on the subject of haplogroup X and Native American population history. Rather than writing a blog summary of it (which has been my usual approach for publications), we decided to try something different: make the paper itself open access and respond here to a few questions about it that we’ve seen from a variety of sources.  We hope that this approach will be helpful to interested readers!

What is the paper about?

We reviewed existing genetic data to answer the question: Could mitochondrial haplogroup X2a have been brought to the Americas by an ancient trans-Atlantic migration? This is a rather old question from the perspective of anthropological geneticists, but we’ve seen it appear in both academic publications and documentaries rather frequently. We thought it was worth revisiting in light of recent genetic publications.

Quite simply, we found that mitochondrial and genomic data do not support this migration hypothesis as the most plausible explanation for X2a’s presence in North America. Instead, the most parsimonious interpretation of the genetic data continues to be that haplogroup X2a had the same migration history and ancestry as the other founder Native American mitochondrial lineages (i.e., from Siberia). Based on the current evidence, we feel that there is no need to invoke a distinct origin for individuals bearing this lineage.

If’ you’d like another summary of the paper, Andy White wrote a very good blog post about it here.

Where can I get a copy?

We’ve sent a request to the publisher to make the paper open-access, and are waiting for them to process the request. We’ll update this post with a link as soon as the process is finalized. In the meantime, you can email us for a copy or find it on Jennifer Raff’s academia.edu page

How can you say that this proves once and for all that all Native Americans have exclusively Beringian ancestry when you haven’t sequenced all of them? Isn’t that unscientific?

We don’t say that. This work presents our best interpretation of all the genetic evidence currently available that are relevant to this question. In fact, we end the paper saying:

It is of course possible that genetic evidence of an ancient trans-Atlantic migration event simply has not been found yet. Should credible evidence of direct gene flow from an ancient Solutrean (or Middle Eastern) population be found within ancient Native American genomes, it would require the field to reassess the “Beringian only” model of prehistoric Native American migration. However, no such evidence has been found, and the Beringian migration model remains the best interpretation of the genetic, archaeological, and paleoclimate data to date.

We don’t think it’s likely that new evidence will suddenly crop up showing another source of ancestry for Native Americans, but it remains a formal, albeit remote, possibility. Should such evidence be found, it will require us to reexamine our models. But we can’t incorporate hypothetical results into our interpretations. That would be unscientific.

Doesn’t skeletal data contradict the Beringian hypothesis? What about the very early Paleoindians whose skulls look physically different from later and contemporary Native Americans? Aren’t they proof that Native Americans have European ancestry?

The skeletal data show changes over time in the cranial morphology of ancient Native American populations. It’s true that comparisons of skull shapes were, for a very long time, how anthropologists studied genetic relationships between populations. However, over the last few decades, we’ve developed the technology to assess biological relationships between individuals and populations by comparing genomes. It’s generally acknowledged that this is a more precise, direct means of assessing ancestry than morphology, which can be influenced by environmental, developmental, and cultural factors.

Furthermore, the genomes of several of the Paleoindians with differently shaped crania have been examined, and they show no evidence of different ancestry than later or contemporary Native Americans. For example, Kennewick Man, who we discuss in the paper, exhibited what some have described as “Caucasoid” cranial features. However, his overall genetic affinities group him with Siberians/East Asians, not Europeans. And his mitochondrial haplogroup is the most basal lineage of X2a so far observed. This result shows that X2a—and this Paleoindian cranial morphology—are compatible with Siberian ancestry.

Why the skulls of the earliest inhabitants of the Americas look different from the later indigenous inhabitants is a very interesting question. We suspect it has to do with evolutionary forces like selection or drift acting on morphology over millennia. Current genomic research just doesn’t show evidence that they had different ancestry from later Native American groups.

Isn’t it pretty well proven that Clovis technologies are descended from Solutrean technologies?

No. The majority of archaeologists think that the similarities between the Clovis and Solutrean points are either spurious or coincidental. Very, very few archaeologists interpret the data as supporting the Solutrean hypothesis. We don’t see the genetic evidence as supporting the Solutrean hypothesis either.

Archaeologists were wrong about the “Clovis First” hypothesis, so doesn’t that mean that you’re wrong too?

Why? These are two separate models. The model of Beringian genetic ancestry of Native Americans is not dependent on the Clovis First hypothesis; in fact, the same evidence from which the “Beringian Pause” model was developed—early coalescence dates of mitochondrial lineages and ancient DNA data—was an important component in overturning the Clovis First model.

In science, any hypothesis is falsifiable, and any model is provisional pending contradictory data. The overturning of the Clovis First model is a great example of the process working as it should.

Isn’t it unfair to critique the Solutrean hypothesis before it’s been fully “fleshed out?” There’s bound to be more data supporting it soon!

Any hypothesis is open to testing, otherwise it’s not scientific. And there’s no “waiting period” to protect a hypothesis until it’s gathered enough data to make it immune to criticism. This argument is a species of special pleading—no other idea in archaeology is treated this way.

What about the signal of “West Eurasian” ancestry seen in Native American genomes? Does it support a trans-Atlantic migration?

This finding has led to a lot of confusion among non-geneticists, and we address it in some detail in the paper. To summarize: Raghavan et al. (2014) and Rasmussen et al. (2014) studied the genomes of the Siberian Mal’ta individual and the Anzick-1 individual, respectively, and they found that a portion of their ancestry (between 14-38%) was derived from a population that also contributed alleles to the contemporary inhabitants of West Eurasia. Notably, the contemporary European gene pool appears to have emerged quite recently—within the last 8,000 years—as a result of significant migration and admixture events. We don’t know what the genomes of Solutrean peoples looked like, since none have been sequenced yet, but from these findings we predict that they would more closely resemble pre-Neolithic hunter-gatherers than contemporary Europeans [see Allentoft et al. 2015, Haak et al. 2015, and Lazaridis et al. 2014]. Importantly, based on the pre-Neolithic genomes that have been studied, it appears that these early European hunter-gatherers did not exhibit close genetic affinities to Native Americans.

Several studies have also formally tested the evolutionary relationships between Native American genomes and genomes from ancient and contemporary populations worldwide (see Rasmussen et al. 2015, Raghavan et al. 2015, and Lazardis et al. 2014). These studies have consistently showed that the model which best fits the current genetic data did not match the predictions of the Solutrean hypothesis. We discussed this in the paper, noting that the most supported model:

was one in which the population ancestral to Native Americans was derived from ancient North Eurasian and East Asian sources, while contemporary Europeans were derived from ancient North Eurasian and West Eurasian sources. In other words, gene flow was from the ancestral North Eurasian population into both the ancestral Native American and ancestral European populations. Lazaridis et al. (2014) did not find any evidence of Pleistocene gene flow directly from West Eurasians into Native Americans. Their model is also consistent with other studies, which have shown that 62-86% of Native American ancestry derives from East Asia.

We’ll update this FAQ with the answers to more questions as they arise, so do check back. If you  have any questions, feel free to leave them in the comments section and we’ll try to get to them as soon as our schedules allow.

Ancient DNA from two 11,500 year old burials in Alaska

Today I and my collaborators have a new paper published in PNAS!  Justin Tackney, the lead author of the paper, was kind enough to write up a summary of the findings to publish here on Violent Metaphors. Here is his take:

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The Genetic Analysis of the Alaskan North Slope

My colleagues and I have just published a paper on the genetic diversity and population history of contemporary Iñupiat peoples (the indigenous inhabitants of the North Slope of Alaska) in the American Journal of Physical Anthropology.  It’s open-access for at least a few months, so you can read it in its entirety here, our collaborator Dr. Anne Jensen ‘s thoughts on it here, and Archaeology Magazine’s article on the paper here. I’ve also summarized our findings below.

Here I am working at the Nuvuk site in 2009.
Me, working at the Nuvuk site in 2009.

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The genetic prehistory of the North American Arctic

I’ve been waiting for this paper for months! The Willerslev group has just published the results of their study on ancient DNA from Paleo-Eskimos in the North American Arctic. Unfortunately, this article is behind a paywall at the journal Science, but I’ll give you a brief summary of the results, and talk a bit about why this paper matters and what it means for our understanding of the peopling of the Americas. Continue reading

Genetics professors unite in criticism of Nicholas Wade’s book.

Skyline

In a series of recent posts I and several others have strongly criticized Nicholas Wade’s recent book “A Troublesome History”, which purports to show that human races are biologically meaningful categories, characterized by different behavioral tendencies (which have resulted in different degrees of socio-political success). Now 139 professors with expertise in genetics, human biology, biological anthropology, and evolution have added their voices to this discussion, criticizing Wade’s book in a strongly worded letter that appears in the New York Times today. The full text of their letter can be found here. Organized by Grahm Coop, Michael Eisen, Rasmus Nielsen, Molly Przeworski, and Noah Rosenberg, the signatories include many of the leading researchers in human genomics (a full list of signatories and their affiliations can be found here).

Several of the authors are people whose research Mr. Wade cited approvingly in his book as supporting his thesis, such as Dr. Sarah Tishkoff, Dr. David Reich, and Dr. Noah Rosenberg (lead author of the 2002 paper that Mr. Wade uses as the primary evidence for his conception of genetically distinct races).

According to Michael Balter in an article appearing today in Science:

The letter was spearheaded by five population geneticists who had informally discussed the book at conferences, says co-organizer Rasmus Nielsen of the University of California, Berkeley. “There was a feeling that our research had been hijacked by Wade to promote his ideological agenda,” Nielsen says. “The outrage … was palpable.”

The authors don’t mince words:

Wade juxtaposes an incomplete and inaccurate account of our research on human genetic differences with speculation that recent natural selection has led to worldwide differences in I.Q. test results, political institutions and economic development. We reject Wade’s implication that our findings substantiate his guesswork. They do not.

We are in full agreement that there is no support from the field of population genetics for Wade’s conjectures.

This letter is highly inconvenient for Mr. Wade, making it clear that the senior researchers in the fields from which he’s trying to marshal support categorically reject his storytelling and bad science. Nor can he continue to make the (untrue) argument that critiques of his book are largely politically based, and conducted mainly by social scientists. A strong blow has been dealt to scientific racism today.

 

For further reading, check out the Nature blog on the subject: http://blogs.nature.com/news/2014/08/geneticists-say-popular-book-misrepresents-research-on-human-evolution.html, and Jeremy Yoder’s post: http://nothinginbiology.org/2014/08/08/population-geneticists-to-nicholas-wade-you-know-nothing-of-our-work/

 

UPDATE: Mr. Wade has issued a statement responding to the letter.  He starts out reasserting the position I claimed above that he can’t continue to hold:

“This letter is driven by politics, not science. I am confident that most of the signatories have not read my book and are responding to a slanted summary devised by the organizers.

As no reader of the letter could possibly guess, “A Troublesome Inheritance” argues that opposition to racism should be based on principle, not on the anti-evolutionary myth that there is no biological basis to race.  Unfortunately many social scientists have long denied that there is a biological basis to race. This creed, prominent throughout the academic world, increasingly impedes research. Biologists risk damaging their careers if they write explicitly about race.

 

In yesterday’s post on the subject, Mr. David Dobbs described who several of the authors are:

Those signers include

  • Noah Rosenberg, the lead author of a 2002 paper that Wade leans on especially heavily, ”Genetic Structure of Human Populations,“ as well as at least two other authors of the paper.

  • Yale’s Kenneth Kidd, who is one of the world’s most respected population geneticists, a central figure in establishing the field, and another co-author on the 2002 Rosenberg paper.

  • Stanford’s Jonathan Pritchard, another co-author on that paper and the researcher whose lab designed the ”Structure“ genetic analysis software that created the ”clustering“ data Wade says supports his argument.

  • Sarah Tishkoff, lead author of a 2009 paper on ”The Genetic Structure and History of Africans and African-Americans“ that Wade cited extensively as crucial support.

  • Jun Li and Richard Myers, the lead and senior authors of a 2008 paper, ”Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation,” that, as I noted in my review, Wade misrepresented as supporting his argument.

 

These and the other signatories of the letter are the leaders in the field of human population genetics. They do not shy away from research and writing about human genetic variation. Mr. Wade is wrong to imply that they are being intimidated by cultural anthropologists. The fact that they agree on a single statement (on anything) is extraordinary and should be treated seriously.

Further, I suspect that more people on that list have read his book than he believes, simply because I’ve talked to them. In fact, Jerry Coyne, one of the signers of the letter has read it twice. (I encourage you to read his thoughts on the subject at the link above).

Disturbingly, Mr. Wade appears to be adopting the methodology of his “HBD” followers in claiming that evolution requires acceptance of his view of race. The data do not support that position, and saying so doesn’t make any of us anti-evolution, no matter how loudly he says it.

He goes on:

These attacks have included repeated assertions that the book is scientifically inaccurate, a charge for which I have seen no basis. In the same vein, this letter issues general charges without supporting evidence.

True, the letter doesn’t go into a detailed scientific refutation of his book. But there’s hardly space in the letter section of the NY Times to document his numerous errors, and many of us have done that already (For example “The troublesome ignorance of Nicholas Wade” by Agustin Fuentes, “How A Troublesome Inheritance gets human genetics wrong” by Jeremy Yoder, “The genes made us do it: The new pseudoscience of race” by Jon Marks, “A guide to the science and pseudoscience of ‘A Troublesome Inheritance’” by Chris Smith, “A Troubling Tome” by Greg Laden, “On the origin of white power” by Eric Michael Johnson, and “The fault in our DNA” by David Dobbs). If you take a look at the various reviews of his book, you’ll see that they tend to cover many of the same points. Mr. Wade has consistently ignored all of them. His only responses to critics (myself, Agustin Fuentes, Jon Marks, and later Pete Shanks), has been to dismiss our credentials without seriously engaging with the substance of our points, calling us “incoherent with rage”. He’s ignored many other detailed critiques. Given all of this, I’m fairly certain that there are no terms in which 139 professors could couch a critique that would satisfy Mr. Wade. Who is actually being political here?

 

You might find this American Anthropological Association-sponsored debate between Agustin Fuentes and Nicholas Wade illuminating:

 

 

ETA (8/10/14): I mistakenly listed only Dr. Coop as the organizer of the letter. I’ve edited to add the names of the other professors who organized and wrote it. My sincere apologies for the oversight.

Nicholas Wade’s troublesome approach to scientific critiques

Nicholas Wade has a problem. Although his new book, “A Troublesome Inheritance: Genes, Race and Human History”, appears to be selling well, he’s not encountering the praise that he expected from biologists for “courageously” freeing them from the “intimidating social scientists” on the subject of race).

Plus ça change, plus c'est la même chose
Plus ça change, plus c’est la même chose

 

 

What is he arguing? I go over this briefly in my recent piece on the Huffington Post, and in much greater detail here on this blog, but essentially Wade is using patterns of human variation in populations as a justification for claiming that race is a valid, biological taxonomic category. He goes on to speculate (and that’s really the only word for it, since his claims are unsupported by the preponderance of scientific evidence) that these racial differences determine behavioral differences and thereby explain why some civilizations have historically been more successful economically and politically than others. (You can guess which races he’s talking about; his speculation happens to coincide neatly with traditional stereotypes.)

Wade claims that all critics of this viewpoint are motivated by political concerns and ignore data showing that races are genetically distinct enough to be meaningful taxonomic categories of humans. His book relies particularly upon one genomics study to support this point. In his words (emphasis mine):

 

Raff and Marks take issue with one of these surveys, Rosenberg et al. 2002, which used a computer program to analyze the clusters of genetic variation. The program doesn’t know how many clusters there should be; it just groups its data into whatever target number of clusters it is given. When the assigned number of clusters is either greater or less than five, the results made no genetic or geographical sense. But when asked for five clusters, the program showed that everyone was assigned to their continent of origin. Raff and Marks seem to think that the preference for this result was wholly arbitrary and that any other number of clusters could have been favored just as logically. But the grouping of human genetic variation into five continent-based clusters is the most reasonable and is consistent with previous findings. As the senior author told me at the time, the Rosenberg study essentially confirmed the popular notion of race.

 

It’s not a question of logic, but rather what the data show. Rosenberg et al. (2002)’s paper did not analyze or identify just 5 clusters, but rather it considered 1-20 clusters. What Wade is omitting from his paragraph above (and also from his book) is that Rosenberg and colleagues never presented any statistical justification for the choice of 5 clusters over any other number.

Here are the specifics of my criticism, which I posted in response to a commenter on my blog. (If you’re not interested in the statistical refutation of Wade’s argument, feel free to skip this paragraph. I hope Wade takes the time to read it, though). Continue reading

The mystery of the 900 year old “flesh-joined twins”: an example of the scientific method at work

In 1941, an archaeologist named Glenn Black excavated a site called Angel Mounds just east of Evansville Indiana. Angel Mounds (AD1050-1400) belonged to the Mississippian culture, which was found throughout the Midwest and Southeast in the centuries just prior to European contact.

When excavating a region of the site dense in children’s graves, Black uncovered a grave which contained two babies buried together in a very unusual manner: heads facing away from each other, legs intertwined, hands joined:

From Marshall et al. 2011, figure 2, showing the burial position of the two children.  Note that this is not a photograph but rather a sketch image. While it’s important to show the disposition of the skeletal elements in order to illustrate the scientific background, out of respect for descendent communities I (and others) feel it is inappropriate to post actual photographs of human remains without permission.
From Marshall et al. 2011, figure 2, showing the burial position of the two children.
Note that this is not a photograph but rather a sketch image. While it’s important to show the disposition of the skeletal elements in order to illustrate the scientific background, out of respect for descendent communities I (and others) feel it is inappropriate to post actual photographs of human remains without permission.

He interpreted this burial as “flesh-joined” twins, as they didn’t have any fused skeletal elements. Conjoined twinning* occurs when a single fertilized egg splits only partially into two fetuses (as opposed to complete splitting in monozygotic twins). The rate of conjoined twinning in the United States is approximately 1/ 33,000-165,000 births, but the frequency of conjoined twinning in ancient societies is unknown.

The children’s remains, along with those of other people excavated from Angel, were taken to be cared for by the Glenn A. Black Laboratory of Archaeology at Indiana University, Bloomington.

Seventy years later, my colleague Dr. Charla Marshall became interested in the children, and in Black’s hypothesis that they were conjoined twins. With permission of the curators at the Glenn Black laboratory, she undertook a comprehensive analysis of the children.**

Dr. Charla Marshall, doing ancient DNA work. Note the protective clothing designed to minimize risk of contamination from modern DNA.
Dr. Charla Marshall, doing ancient DNA work. Note the protective clothing designed to minimize risk of contamination from modern DNA.

She and her colleagues found that the two children (designated W11A60 and W11A61) were approximately 3 months old, and had evidence for poor health, but otherwise saw no skeletal evidence that could either support or reject the hypothesis that they were conjoined twins.

Fortunately, Dr. Marshall happened to be an expert in the one method that would definitively tell whether the children were twins or not: ancient DNA analysis. Because mitochondrial DNA is maternally inherited, siblings (and twins) MUST have the same mitochondrial sequence.

Both children, despite having been dead for nearly a thousand years, had ancient DNA still preserved. By extracting the DNA and sequencing it, Dr. Marshall was able to determine their mitochondrial lineages (haplogroups). [I give a little bit of background into how ancient DNA research is done here and here].

Surprisingly, they were different! In the table below, you can see the mutated DNA base positions for each child listed in the third column (under ‘haplotype’). The particular combination of mutations for each child means that they belonged to two different haplogroups: A and C.

Marshall et al. 2011, Table 3.
Marshall et al. 2011, Table 3.

Therefore, the “conjoined twins” were neither twins nor siblings, nor maternal relatives of any kind. Black’s 70 year old hypothesis was wrong.

Why were they buried in such a peculiar way? Dr. Marshall and her colleagues (Cook et al., 2012)*** presented a paper last year at the Midwest Archaeological Conference in which they discussed possible interpretations for this burial practice.

Perhaps, they suggest, the children were non-maternal relatives (maybe half-siblings who shared a father?), who died at the same time and were buried together to reflect this close relationship. Or perhaps the arrangement of the babies’ bodies was entirely symbolic.

Twins play a special role in Eastern Native American iconography, and different Native American societies treat twins in different ways; in some cases they are regarded as having special spiritual power, in other ancient societies they were thought to be negative. Perhaps the co-burial of two maternally un-related children of the same age was meant to be symbolic of twinship, rather than having a literal meaning.

In general, co-burial of individuals was a pretty common practice among the ancient Mississippians, and typically archaeologists have interpreted the co-buried individuals as being related to each other. However, those of us doing ancient DNA research in the Midwest have been testing this hypothesis on co-burials and finding that they’re almost never maternally related. Because no ancient Y-chromosome DNA has yet been recovered from Midwestern co-burials, we don’t know if they might be paternally related.

The motivation for Mississippians to bury people together, and these two children at Angel Mounds in particular, continues to be a mystery. However, the approach of Dr. Marshall and colleagues is a very good example of how persistent research can disprove a long-standing, wrong hypothesis. It may be that future generations of students will be able to solve this mystery with additional genetic evidence.
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*The more popular term, “Siamese twins”, was introduced by P.T. Barnum to refer to Eng and Chang Bunker (http://en.wikipedia.org/wiki/Chang_and_Eng_Bunker), who were members of his circus. “Siamese twins” has therefore taken on negative connotations associated with this history.

**Marshall C, Tench PA, Cook, DC, Kaestle FA. 2011. Conjoined twins at Angel Mounds? An ancient DNA perspective. American Journal of Physical Anthropology 146: 138-142.

***Della Collins Cook (Indiana U), Charla Marshall (Southern
Illinois U Carbondale), Cheryl Ann Munson (Indiana U), and Frederika A Kaestle (Indiana U). 2012. If Angel Twins Aren’t Twins, What DO They Represent? Paper presented at Midwestern Archaeological Conference, East Lansing Michigan, Oct 17-21, 2012
( http://www.midwestarchaeology.org/storage/MAC%20Program-final.pdf)