Texas Court Grants Default Judgment Against Alex Jones in Two Case

First reported here, and thanks to the reporter, Sebastian Murdock, for sharing the court order. (It’s often difficult to obtain these from state trial courts, and in this case it was even harder as the court’s e-filing system is down for a few days.)

The court is granting a judgment in favor of the plaintiffs without having had a trial or considering the uncontested evidence. That normally only happens if the defendants completely fail to show up. Here, the judge did it because Jones was refusing to comply with discovery. That basically means they weren’t turning over emails, recordings, and other documents the plaintiffs are entitled to get in order to prepare for trial. Discovery abuses are pretty common, but not at this level; it’s very rare for a court to grant default as a sanction like this. I would have expected the court to put more details into the background and findings, explaining those abuses and the failure of lesser sanctions in more detail, but it still seems like a solid order to me.

Jones is screwed. The next step, I believe, is a jury trial to determine the exact amount of damages he will owe. He’s been pleading poverty on his show (listen to the excellent Knowledge Fight podcast for more), so if that’s true–though only a fool would take Alex Jones his word–this is going to be ruinous for him.

We can only hope.

Litigating against malicious misinformation like Jones’s is a two-edged sword. This is a relatively rare example of a case that is effectively punishing abusive speech without treading on constitutional protections. Best of luck to the plaintiffs here.

On Race, Genetics, and Pseudoscience

How do scientists talk about race? For quite some time a small group of geneticists have been engaged in deep conversations about how best to convey the complexities of, and the relationship between race, DNA, and human variation to the general public. We come from different backgrounds—Ewan is the director of the European Bioinformatics Institute, Adam is a geneticist and science writer, Aylwyn is a human evolutionary geneticist, and I am an anthropological geneticist—and nationalities, but are united in our agreement that patterns of human genetic variation do not support the biological division of people into races.

Over the course of a year, we worked together on a statement that best reflects our consensus view of human genetic variation, race, and even the fraught topic of race and IQ. We wanted to correct the misconceptions that many people have about these topics, and directly confront a number of untrue ideas promoted by a small group of pseudo-scientists who refer to themselves as “race realists” or proponents of “human biological diversity” (HBD).

The result is a (rather lengthy) statement which Ewan has posted in its entirety here. I want to summarize its main points here with excerpts, but I encourage everyone to go read the whole thing. We intend for this statement to contribute to the ongoing conversation between scientists, social scientists, scholars in the humanities, the media, and the public.

(Also please note that I kept the original British spellings in excerpts that I quoted from the statement).

The biological race concept emerges from a particular history

Research in the 20th century found that the crude categorisations used colloquially (black, white, East Asian etc.) were not reflected in actual patterns of genetic variation, meaning that differences and similarities in DNA between people did not perfectly match the traditional racial terms. The conclusion drawn from this observation is that race is therefore a socially constructed system, where we effectively agree on these terms, rather than their existing as essential or objective biological categories.

Describing race as a social construct does not undermine its existence, nor its importance; it merely points out that there is no fundamental biological basis for race.

Human population structure is not race

Some people claim that the exquisitely detailed picture of human variation that we can now obtain by sequencing whole genomes contradicts this. Recent studies, they argue, actually show that the older notions of races as biological categories (some dating back to the 18th century) were basically correct in the first place. As evidence for this they often point to the images produced by analyses in studies that seem to show natural clustering of humans into broadly continental groups based on their DNA. But these claims misinterpret and misrepresent the methods and results of this type of research. Populations do show both genetic and physical differences, but the analyses that are cited as evidence for the concept of race as a biological category actually undermine it.

Geneticists use a variety of tools to visualise the subtle and complex patterns of genetic variation between people, and to mathematically cluster them together based on relatedness. Such methods are helpful for exploring data, but have also been the source of wider confusion. For example, Principal Component Analysis (PCA) plots often show distinct, colourful clusters of dots that appear to separate groups of people from different parts of the world. In some cases, these clusters even seem to correspond to traditional racial groupings (e.g. ‘Africans’, ‘Europeans’ and ‘Asians’). It is images such as these which are often deployed as genetic evidence for the existence of separate races. But these methods can be misleading in ways which non-experts – and even some specialists – are unaware of. For example, some of the observed genetic clustering is a reflection of the samples that were included in the study and how they were collected, rather than any inherent genetic structure. DNA sample collection typically follows existing cultural, anthropological or political groupings. If samples are collected based on pre-defined groupings, it’s entirely unsurprising that the analyses of these samples will return results that identify such groupings. This does not tell us that such taxonomies are inherent in human biology.

Traits, IQ, and genetic diversity

‘Human biodiversity’ proponents sometimes assert that alleged differences in the mean value of IQ when measured in different populations – such as the claim that IQ in some sub-Saharan African countries is measurably lower than in European countries – are caused by genetic variation, and thus are inherent. The purported genetic differences involved are usually attributed to recent natural selection and adaptation to different environments or conditions. Often there are associated stories about the causes of this selection, for example that early humans outside Africa faced a more challenging struggle for survival, or that via historical persecution and restriction of professional endeavours, Ashkenazi Jews harbour genes selected for intellectual and financial success.

Such tales, and the claims about the genetic basis for population differences, are not scientifically supported. In reality for most traits, including IQ, it is not only unclear that genetic variation explains differences between populations, it is also unlikely. To understand why requires a bit of background.

(Most genome-wide association studies for detecting variants associated with complex traits such as IQ, known as GWAS) have been carried out in populations sampled from across Europe, and have ancestries consistent with this sampling. In many cases though, only certain subsets of people are included in these analyses – for good scientific reasons. For example, samples of “European” populations used in genetic studies often have excluded up to as many as 30% of self-identified Europeans. This is because some individuals introduce hard-to-model complications into the data, forming distinct sub-clusters or complicating the genetic model. For example, Finns and Sardinians are often excluded as they have quite distinct genetic ancestries compared to many other Europeans, as are some people in India, north Africa, Latino/Hispanics, and many individuals with complex ancestries, despite confident self-identification within their ethnic group. Researchers therefore often exclude them from the set of people used in a particular GWAS analyses, on the basis that their unique population histories can invalidate the statistical models used in these techniques.

This, in turn, can confuse people who read the studies and observe distinct and seemingly ‘natural’ population clusters emerge. If they aren’t familiar with the practice of removing these individuals with more complex ancestries (or don’t read the detailed methods, which are often tucked away in elusive supplementary sections of a published paper), they could easily be misled into thinking that the populations in these analyses are much more distinct than they are in reality. The resulting biases are poorly understood, and the terminology involved can be confusing to non-specialists. Furthermore, while it is clear to GWAS researchers that the results of their analyses tend to be specific to the population studied and their predictions cannot be reliably extended to other populations with very different ancestry, this is not widely recognised or understood by non-specialists.

IQ scores are heritable: that is, within populations, genetic variation is related to variation in the trait. But a fundamental truism about heritability is that it tells us nothing about differences between groups. Even analyses that have tried to calculate the proportion of the difference between people in different countries for a much more straightforward trait (height) have faced scientific criticisms. Simply put, nobody has yet developed techniques that can bypass the genetic clustering and removal of people that do not fit the statistical model mentioned above, while simultaneously taking into account all the differences in language, income, nutrition, education, environment, and culture that may themselves be the cause of differences in any trait observed between different groups. This applies to any trait you could care to look at – height, specific behaviours, disease susceptibility, intelligence.

Not only that, the genetic knowledge we gain from studying our mainly-European pools of participants becomes highly unreliable when it is applied to those with different ancestries. Although it is a common trope to argue that we will have the answer to the question of the genetic basis of group differences in traits “in the next five years”, or “in the next decade”, the advances in genomics reveal that the question is far more complex than we could have imagined, even just a few years ago. Consequently, anyone who tells you that there’s good evidence on how much genetics explain group differences (rather than individual differences) is fooling you – or fooling themselves.

However, there are some strong hints towards the answer. The genetic variants that are most strongly associated with IQ in Europeans are no more population-specific than any other trait. To put it bluntly, the same genetic variants associated with purportedly higher IQ in Europeans are also present in Africans, and have not emerged, or been obviously selected for, in recent evolutionary history outside Africa. Moreover, since it is a complex trait, the genetic variation related to IQ is broadly distributed across the genome, rather than being clustered around a few spots, as is the nature of the variation responsible for skin pigmentation. These very different patterns for these two traits mean that the genes responsible for determining skin pigmentation cannot be meaningfully associated with the genes currently known to be linked to IQ. These observations alone rule out some of the cruder racial narratives about the genetics of intelligence: it is virtually inconceivable that the primary determinant of racial categories – that is skin colour – is strongly associated with the genetic architecture that relates to intelligence. 

Finally, multiple lines of evidence indicate that there are complex environmental effects (as might reasonably be expected) on measures of IQ and educational attainment. Many socioeconomic and cultural factors are entangled with ancestry in the countries where these studies are often performed – particularly in the USA, where structural racism has historically and continues to hugely contribute to economic and social disparities. We cannot use populations in these countries to help answer the question of why IQ scores are claimed to be lower in other countries with entirely different social, economic, and cultural histories, nor to answer the role of genetics for alleged differences in IQ measures between groups inside a country with strong societal differences linked to ancestry (for example, the USA). Thus, confident assertions that current GWAS show us that ‘race’ is associated with cognitive function are simply wrong. It is our contention that any apparent population differences in IQ scores are more easily explained by cultural and environmental factors than they are by genetics.

The history of our species is complex and convoluted, and our genomes reflect that. As we delve deeper into the DNA of the people of the world, the science of genetics becomes even more complex too. But we see no scientifically sound evidence that contemporary genetics can be used to recapitulate biological or historical concepts for race. It is our duty and wish that this understanding is spread far and wide.

Ewan Birney

European Molecular Biology Laboratory, European Bioinformatics Institute

Jennifer Raff

Department of Anthropology, University of Kansas.

Adam Rutherford

Genetics, Evolution & Environment, University College London

Aylwyn Scally

Department of Genetics, University of Cambridge

The authors wish to thank Stuart Ritchie for his valuable contributions to our discussion.

**Note: comments for this post are not enabled**

Happy new year!

I hope that everyone has a wonderful holiday. If you’d like to read something about science, I have a new-ish post up at Forbes to close the year out: “Five Amazing Things We Learned About History From Ancient DNA In 2018“.

Every year ancient DNA research deepens our understanding of history a bit more, and 2018 was truly a remarkable year for ancient DNA research. By February the total number of genomes characterized from ancient individuals surpassed 1,300. I want to highlight five of what I think are the most interesting discoveries made this year

Thanks, as always, for reading!

–Jennifer and Colin

Some archaeology reading to kick off this week

My latest for Forbes discusses the new paper by Rascovan and colleagues, “Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline.”

Researchers investigated the hypothesis that the so-called “Neolithic Decline”—population decreases throughout Europe—was caused at least in part by pandemics. To do this, they cleverly made use of one feature of paleogenomics that often causes researchers to tear their hair out. When we sequence or genotype ancient DNA extractions, we get back data from all the DNA extracted from the ancient source, including large amounts of microbial DNA. This can be incredibly frustrating if you’re trying to reconstruct a genome of the human whose bone (or tooth, or hair) you’re extracting from; it can be enormously expensive to sequence enough DNA to get a whole human genome. However, in this case, the researchers were able to look at published datasets to see if they could find evidence of pathogens in DNA published from Neolithic individuals buried in a high-density passage grave in the Frälsegården cemetery in Falbygden (western Sweden).

You can read more here.

@ArchaeOhlrau, who works on Trypillia mega-sites (which Rascovan et al. implicated in the origins of plague), did a Twitter thread on this paper critiquing some of their interpretations and providing some much-needed context. For example,

I highly recommend you check out his thread on the subject (h/t @monicaMedHist).

For more Forbes archaeology awesomeness, check out this story by David Anderson about the resilience of Hohokam canal builders in the face of environmental disasters:

Despite the odds, members of the Hohokam culture were able to work together to bring an agricultural lifestyle to a harsh desert environment for one-thousand years. This success required collaborative labor to maintain a system of civil infrastructure in the form of an extensive system of canals. Repeated environmental catastrophes, however, can wear down even the most prepared societies. Something people today should perhaps keep in mind.

And Kristina Killgrove tackled the fascinating question of whether or not a gold artifact was a Roman nipple cover, connecting the difficulties of interpreting the purpose of ancient artifacts without projecting our own ideas upon the past to Tumblr’s new terms of service:

In response to recent terms-of-service changes at Tumblr that ban “adult content,” many users of the microblogging site are firing back, trolling the site’s administrators with non-pornographic images that they worry will be banned by the new policy. This “ancient Roman nipple cover” posted by peashooter85 is one such image, and it has gained tens of thousands of responses in a couple days’ time. There’s one problem, though: archaeologists are unsure about that identification.

You can read the full post here.

If you have any questions, feel free to drop them in the comment section or hit me up on Twitter. (Although if you see me on there too much, feel free to remind me that I should be working on my book or academic papers instead).

 

Edited to add: If you’d rather listen to a podcast than read, a new Archaeological Fantasies episode that I’m on just dropped!

 

Round up of Forbes blogs

I am absolutely terrible at promoting my writing. I’m going to try to remedy that by posting links to my Forbes blogs regularly here.

I didn’t write very much last month (I was extremely busy with academic stuff and drafting the first chapter of my book), but usually I aim for about 5 pieces a month, covering topics in genetics and anthropology.

Here’s my latest, on the origins of milk pastoralism in Northern Mongolia: https://www.forbes.com/sites/jenniferraff/2018/12/07/how-bronze-age-northern-mongolian-peoples-got-milk/#40b24b841588

And here’s a page with links to all my past pieces. https://www.forbes.com/sites/jenniferraff/#350bd02f3eef

Would you rather I post them here as they come out, or do a monthly round-up of links? I don’t want to clog up your inboxes, and I do post them as they come out on my Twitter. Let me know what you prefer in the comments. And as always, thanks for reading!

Exciting news!

For the last year, alongside learning about the joys and challenges of new motherhood and doing my academic work, I’ve also been quietly working on a new project. That new project is finally in a place where I can share it with people: I’m thrilled to announce that last week I signed a book contract with Twelve Books !

My book (which is tentatively titled “Origin”) will be a history of the Americas, from initial peopling to the present day, through the lens of genetics. But I’m also going to use this as an opportunity to continue my blogging mission on a bigger scale: to teach people about the fundamentals of genetics, ancient DNA, and showcase stories from the remarkable work of my colleagues in the field of anthropological genetics.

I’m not just going to be talking about the science either. The news of Elizabeth Warren’s genetic testing results this week has highlighted just how interested the public is in the intersection of questions about ancestry and identity…and just how confused people are about what DNA testing results mean and don’t mean. I want to do my small part to help people understand these issues, particularly when it comes to claims about Native American ancestry, as I did earlier this week in my new piece for Forbes. And oh yes…. I will be talking about race and genetics. I may do it imperfectly, but I’m not going to shy away from that topic when it’s so critical to this present moment.

I’m acutely aware of the fact that I’m a non-Native person writing about extraordinarily sensitive issues, and I am grateful for the help that many of my Native American colleagues have generously offered for this project. I’m also grateful to the many scientists (both Native and non-Native) whose research I will be featuring (if you would like to chat with me about your work, email me or hit me up at the AAPAs!).

So, if all goes well, I should have a finished manuscript in about a year from now, and a published book a little while after that. I’ll let everyone know more when we are closer to having a book (!) for you to read. Thank you all so much for your support and good wishes–they really mean the world to me.

Book review: What does heredity mean these days?

I don’t do very many book reviews, but I jumped at the opportunity when the New York Times recently asked me to review Carl Zimmer’s new book “She has her mother’s laugh: The powers, perversions, and potential of heredity.”* As I was very familiar with Carl’s science writing, I had high expectations as I began reading, and he definitely exceeded them. This is a delightful monster of a book; 500+ pages that roam through subjects as diverse as Tasmanian devils’ facial tumors, CRISPR’d mosquitoes, and the legal system of property inheritance in ancient Rome. The theme connecting all these stories is our conception of heredity: what does it actually mean in an age of gene editing and surrogacy? (the title suggested for my review by my editor).

9781101984598

 

I found this subject personally fascinating, because I was able to connect with it strongly from the perspective of a new mother. Here is an excerpt from my review:

“She Has Her Mother’s Laugh” challenges our conventional wisdom about heredity, especially as we enter the new realms of surrogate pregnancy and gene editing. One of the most astonishing insights is that mothers don’t just pass traits to their children — they receive them as well. I read Zimmer’s book (occasionally out loud) while feeding my baby son. Like Zimmer, I had genetic counseling and my partner and I experienced the same anxieties as he did. But unlike Zimmer, I was able to assuage our fears using a drop of my own blood. That’s because my baby’s DNA, floating freely in my bloodstream, could be tested for hundreds of genetic disorders at an early point in my pregnancy. We took great comfort in the test, without realizing all of its implications. The baby wasn’t just sharing his genetic secrets during the pregnancy. Fetal cells can persist for years after birth; as I sit and write these sentences, I may very well be a chimera: a mixture of some of my son’s cells and my own. This microchimerism may even have eventual effects on my health, although it isn’t fully understood. And he may carry some of my immune cells, too.

I knew a bit about post-pregnancy microchimerism before reading this, but there’s a ton of details that I was unaware of, and now I want to go read the whole literature on the subject. Here’s a quote from the book that just astonished me:

“Fetal cells don’t simply migrate around their mothers’ bodies. They sense the tissue around them and develop into the same type of cells. In 2010, Gerald Udolph, a biologist in Singapore, and his colleagues documented this transformation with a line of engineered mice. they altered the Y chromosomes in the male mice so they glowed with the addition of a chemical. Udolph and his colleagues bred the mice, and then later they dissected the brains of the mothers. They found that the fetal cells from their sons reached into their brains, sprouted branches, and pumped out neurotransmitters. Their sons helped shape their thoughts.”

!!!!!

Even if that’s not been established as occurring in humans as well, that is really incredible.

Another major focus of the book that’s perhaps even more important from a social perspective was its treatment of the complex topics of heredity, biological race, and eugenics.  In this regard, I think that it’s a much better book than most that I’ve read on the subject, up there with Adam Rutherford’s “A brief history of everyone who ever lived”. It’s accessible without sacrificing accuracy, contextualizing the science with history and nuance.

This book is Zimmer at his best: obliterating misconceptions about science with gentle prose. He brings the reader on his journey of discovery as he visits laboratory after laboratory, peering at mutant mosquitoes and talking to scientists about traces of Neanderthal ancestry within his own genome. Any fan of his previous books or his journalism will appreciate this work. But so, too, will parents wishing to understand the magnitude of the legacy they’re bequeathing to their children, people who want to grasp their history through genetic ancestry testing and those seeking a fuller context for the discussions about race and genetics so prevalent today.

Here’s a link to my full review: https://www.nytimes.com/2018/05/31/books/review/she-has-her-mothers-laugh-carl-zimmer.html

If you’re looking for some stimulating reading this summer, I highly recommend it!

 

 

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*I’m posting this a bit late because the moment I finished writing the review I had to turn to developing my online summer course. Now I have a bit more breathing room, and time to blog more!

In the wake of Wakefield

Colin and I were just interviewed on BBC Radio 4 for a commemoration of sorts. It’s been 20 years since Andrew Wakefield published his infamous paper, “Ileal-lymphoid-nodular hyperplasia, non-specific colitis, and pervasive developmental disorder in childrenalleging an MMR vaccine/colitis/autism link. This paper was retracted after Brian Deer’s and the Lancet’s investigations revealed:

-severe undisclosed conflicts of interest,

-unethical treatment of the children in the study, and

-fraudulent manipulation of data in the study.

However, the damage was done. Vaccination rates dropped not only in the UK, but in the US and worldwide. Outbreaks of vaccine preventable diseases resulted. Although Wakefield denies any part of this, his role is undeniable…especially since his advocacy against vaccinations continues to this present day.

Yesterday BBC Radio 4 aired an hour long program that explored “the continuing legacy of the anti-vaccine movement on the anniversary of one of its most notorious episodes, and explore its impact on health, on research and on culture both at home and abroad.”

The indefatigable science journalist Adam Rutherford explored the history of Wakefield’s attempts to promote the link between vaccines and adverse health effects on the program, interspersing clips of Wakefield speaking in the media with interviews by journalist Brian Deer and public health officials. In the last third of the program, he interviewed both Colin and myself about the ongoing consequences of Wakefield’s advocacy here in the United States. We discussed how Wakefield has tapped into the world of conspiracy theories and a larger movement of distrust of expertise and institutions to promote his ideas (it didn’t make the final cut in the program, but as one example Colin wrote extensively about hearing Wakefield speak on the Conspira-Sea Cruise). We talked about communication with vaccine-hesitant parents and how empathy and good scientific information spread through networks of family, friends, and community leaders can overcome fearmongering. We discussed how being new parents affects our experiences as science communicators, particularly in the realm of vaccine issues. We also spoke about our experiences going to see Andrew Wakefield’s documentary Vaxxed, and how the movie (and the anti-vaccine movement in general) spreads false, damaging, and hurtful rhetoric about persons with autism. (To the ASAN members who were protesting at the movie, I hope you get a chance to listen to this! We talked about how shamefully you were treated in response to your excellent outreach efforts).

Many thanks to Adam and Graihagh Jackson for having us on. I think it’s a fitting commemoration of a shameful incident in the history of medicine, and I hope it helps at least a little bit to push back against the harmful and wrong ideas being spread by Wakefield.

Jenny and Colin BBC
selfie from the NPR studio where we recorded.

 

A Vax for Ox

We closed 2017 with some actual good news: the W.H.O. reported that measles deaths in 2016 worldwide fell to an all time low of 89,780.  According to the New York Times, “the decline — a public health triumph, as measles has long been a leading killer of malnourished children — was accomplished by widespread donor-supported vaccination that began in the early 2000s.”

This is fantastic news! But unfortunately the NYT chose to illustrate their article with yet another photo of a terrified child being held down by two adults, one of whom is jamming a needle into his arm.

As many of us repeatedly point out on twitter, these photos provoke fear and mistrust rather than convey a positive message about vaccination.

As new parents ourselves, we are now intimately acquainted with the terror that goes along with suddenly being responsible for a precious new life. We question and second guess every decision we make about play, feeding, clothing, childcare and traveling. It doesn’t matter that we know rationally how adaptable children are—the emotions take over.

One decision we don’t question is our choice to vaccinate our child Ox (not what it says on his birth certificate) on time and according to schedule. We’d actually been looking forward to his two-month pediatrician appointment, because after he received his shots we would feel much better about our upcoming holiday travels.

mighty bear
Even mighty bears need help fighting off pertussis.

Continue reading

Updates: writing, radio, and podcasts!

It’s been a little while since I’ve updated this blog! I’ve spent all summer working extremely hard to get some academic writing done before our new baby arrives (he’s doing great, and due on Monday!). But although I’ve been fairly quiet here at Violent Metaphors, I’ve been doing some things elsewhere and I thought I should do a quick end-of-summer roundup of everything in one place.

I’ve been writing once a month or so about genetics and archaeology over at The Guardian’s science blog The Past and the Curious along with a fantastic team of archaeologists (my posts are archived here). If you’re interested in human history/prehistory, do check out our blog! That’s where most of my genetics/arch posts are going to be going in the future, with the science literacy/conspiracy theory/vaccine stuff staying here.

My archaeologist colleague Professor Fred Sellet and I were recently interviewed by Ira Flatow about North American prehistory on a live show of Science Friday. Getting to be on a science program that I’ve listened to for over a decade was one of the highlights of the year for me (although there are some things I wish I’d said differently/more clearly in retrospect. It turns out that it’s incredibly nerve-wracking to do a show in front of a large audience, and I could definitely use more practice!).

Finally, I was delighted to be on Tides of History, an incredibly cool history podcast by Patrick Wyman. Patrick’s not only an incredibly smart historian, he’s also my go-to guy for boxing and MMA analysis. Definitely give him a follow on Twitter if you are interested in either of these subjects!

That’s about it for now…I’m working on a series of posts about vaccinating as a brand-new parent, and the first should be up here in a couple of days, so keep an eye on this space!