On Race, Genetics, and Pseudoscience

How do scientists talk about race? For quite some time a small group of geneticists have been engaged in deep conversations about how best to convey the complexities of, and the relationship between race, DNA, and human variation to the general public. We come from different backgrounds—Ewan is the director of the European Bioinformatics Institute, Adam is a geneticist and science writer, Aylwyn is a human evolutionary geneticist, and I am an anthropological geneticist—and nationalities, but are united in our agreement that patterns of human genetic variation do not support the biological division of people into races.

Over the course of a year, we worked together on a statement that best reflects our consensus view of human genetic variation, race, and even the fraught topic of race and IQ. We wanted to correct the misconceptions that many people have about these topics, and directly confront a number of untrue ideas promoted by a small group of pseudo-scientists who refer to themselves as “race realists” or proponents of “human biological diversity” (HBD).

The result is a (rather lengthy) statement which Ewan has posted in its entirety here. I want to summarize its main points here with excerpts, but I encourage everyone to go read the whole thing. We intend for this statement to contribute to the ongoing conversation between scientists, social scientists, scholars in the humanities, the media, and the public.

(Also please note that I kept the original British spellings in excerpts that I quoted from the statement).

The biological race concept emerges from a particular history

Research in the 20th century found that the crude categorisations used colloquially (black, white, East Asian etc.) were not reflected in actual patterns of genetic variation, meaning that differences and similarities in DNA between people did not perfectly match the traditional racial terms. The conclusion drawn from this observation is that race is therefore a socially constructed system, where we effectively agree on these terms, rather than their existing as essential or objective biological categories.

Describing race as a social construct does not undermine its existence, nor its importance; it merely points out that there is no fundamental biological basis for race.

Human population structure is not race

Some people claim that the exquisitely detailed picture of human variation that we can now obtain by sequencing whole genomes contradicts this. Recent studies, they argue, actually show that the older notions of races as biological categories (some dating back to the 18th century) were basically correct in the first place. As evidence for this they often point to the images produced by analyses in studies that seem to show natural clustering of humans into broadly continental groups based on their DNA. But these claims misinterpret and misrepresent the methods and results of this type of research. Populations do show both genetic and physical differences, but the analyses that are cited as evidence for the concept of race as a biological category actually undermine it.

Geneticists use a variety of tools to visualise the subtle and complex patterns of genetic variation between people, and to mathematically cluster them together based on relatedness. Such methods are helpful for exploring data, but have also been the source of wider confusion. For example, Principal Component Analysis (PCA) plots often show distinct, colourful clusters of dots that appear to separate groups of people from different parts of the world. In some cases, these clusters even seem to correspond to traditional racial groupings (e.g. ‘Africans’, ‘Europeans’ and ‘Asians’). It is images such as these which are often deployed as genetic evidence for the existence of separate races. But these methods can be misleading in ways which non-experts – and even some specialists – are unaware of. For example, some of the observed genetic clustering is a reflection of the samples that were included in the study and how they were collected, rather than any inherent genetic structure. DNA sample collection typically follows existing cultural, anthropological or political groupings. If samples are collected based on pre-defined groupings, it’s entirely unsurprising that the analyses of these samples will return results that identify such groupings. This does not tell us that such taxonomies are inherent in human biology.

Traits, IQ, and genetic diversity

‘Human biodiversity’ proponents sometimes assert that alleged differences in the mean value of IQ when measured in different populations – such as the claim that IQ in some sub-Saharan African countries is measurably lower than in European countries – are caused by genetic variation, and thus are inherent. The purported genetic differences involved are usually attributed to recent natural selection and adaptation to different environments or conditions. Often there are associated stories about the causes of this selection, for example that early humans outside Africa faced a more challenging struggle for survival, or that via historical persecution and restriction of professional endeavours, Ashkenazi Jews harbour genes selected for intellectual and financial success.

Such tales, and the claims about the genetic basis for population differences, are not scientifically supported. In reality for most traits, including IQ, it is not only unclear that genetic variation explains differences between populations, it is also unlikely. To understand why requires a bit of background.

(Most genome-wide association studies for detecting variants associated with complex traits such as IQ, known as GWAS) have been carried out in populations sampled from across Europe, and have ancestries consistent with this sampling. In many cases though, only certain subsets of people are included in these analyses – for good scientific reasons. For example, samples of “European” populations used in genetic studies often have excluded up to as many as 30% of self-identified Europeans. This is because some individuals introduce hard-to-model complications into the data, forming distinct sub-clusters or complicating the genetic model. For example, Finns and Sardinians are often excluded as they have quite distinct genetic ancestries compared to many other Europeans, as are some people in India, north Africa, Latino/Hispanics, and many individuals with complex ancestries, despite confident self-identification within their ethnic group. Researchers therefore often exclude them from the set of people used in a particular GWAS analyses, on the basis that their unique population histories can invalidate the statistical models used in these techniques.

This, in turn, can confuse people who read the studies and observe distinct and seemingly ‘natural’ population clusters emerge. If they aren’t familiar with the practice of removing these individuals with more complex ancestries (or don’t read the detailed methods, which are often tucked away in elusive supplementary sections of a published paper), they could easily be misled into thinking that the populations in these analyses are much more distinct than they are in reality. The resulting biases are poorly understood, and the terminology involved can be confusing to non-specialists. Furthermore, while it is clear to GWAS researchers that the results of their analyses tend to be specific to the population studied and their predictions cannot be reliably extended to other populations with very different ancestry, this is not widely recognised or understood by non-specialists.

IQ scores are heritable: that is, within populations, genetic variation is related to variation in the trait. But a fundamental truism about heritability is that it tells us nothing about differences between groups. Even analyses that have tried to calculate the proportion of the difference between people in different countries for a much more straightforward trait (height) have faced scientific criticisms. Simply put, nobody has yet developed techniques that can bypass the genetic clustering and removal of people that do not fit the statistical model mentioned above, while simultaneously taking into account all the differences in language, income, nutrition, education, environment, and culture that may themselves be the cause of differences in any trait observed between different groups. This applies to any trait you could care to look at – height, specific behaviours, disease susceptibility, intelligence.

Not only that, the genetic knowledge we gain from studying our mainly-European pools of participants becomes highly unreliable when it is applied to those with different ancestries. Although it is a common trope to argue that we will have the answer to the question of the genetic basis of group differences in traits “in the next five years”, or “in the next decade”, the advances in genomics reveal that the question is far more complex than we could have imagined, even just a few years ago. Consequently, anyone who tells you that there’s good evidence on how much genetics explain group differences (rather than individual differences) is fooling you – or fooling themselves.

However, there are some strong hints towards the answer. The genetic variants that are most strongly associated with IQ in Europeans are no more population-specific than any other trait. To put it bluntly, the same genetic variants associated with purportedly higher IQ in Europeans are also present in Africans, and have not emerged, or been obviously selected for, in recent evolutionary history outside Africa. Moreover, since it is a complex trait, the genetic variation related to IQ is broadly distributed across the genome, rather than being clustered around a few spots, as is the nature of the variation responsible for skin pigmentation. These very different patterns for these two traits mean that the genes responsible for determining skin pigmentation cannot be meaningfully associated with the genes currently known to be linked to IQ. These observations alone rule out some of the cruder racial narratives about the genetics of intelligence: it is virtually inconceivable that the primary determinant of racial categories – that is skin colour – is strongly associated with the genetic architecture that relates to intelligence. 

Finally, multiple lines of evidence indicate that there are complex environmental effects (as might reasonably be expected) on measures of IQ and educational attainment. Many socioeconomic and cultural factors are entangled with ancestry in the countries where these studies are often performed – particularly in the USA, where structural racism has historically and continues to hugely contribute to economic and social disparities. We cannot use populations in these countries to help answer the question of why IQ scores are claimed to be lower in other countries with entirely different social, economic, and cultural histories, nor to answer the role of genetics for alleged differences in IQ measures between groups inside a country with strong societal differences linked to ancestry (for example, the USA). Thus, confident assertions that current GWAS show us that ‘race’ is associated with cognitive function are simply wrong. It is our contention that any apparent population differences in IQ scores are more easily explained by cultural and environmental factors than they are by genetics.

The history of our species is complex and convoluted, and our genomes reflect that. As we delve deeper into the DNA of the people of the world, the science of genetics becomes even more complex too. But we see no scientifically sound evidence that contemporary genetics can be used to recapitulate biological or historical concepts for race. It is our duty and wish that this understanding is spread far and wide.

Ewan Birney

European Molecular Biology Laboratory, European Bioinformatics Institute

Jennifer Raff

Department of Anthropology, University of Kansas.

Adam Rutherford

Genetics, Evolution & Environment, University College London

Aylwyn Scally

Department of Genetics, University of Cambridge

The authors wish to thank Stuart Ritchie for his valuable contributions to our discussion.

**Note: comments for this post are not enabled**

Genetics professors unite in criticism of Nicholas Wade’s book.

Skyline

In a series of recent posts I and several others have strongly criticized Nicholas Wade’s recent book “A Troublesome History”, which purports to show that human races are biologically meaningful categories, characterized by different behavioral tendencies (which have resulted in different degrees of socio-political success). Now 139 professors with expertise in genetics, human biology, biological anthropology, and evolution have added their voices to this discussion, criticizing Wade’s book in a strongly worded letter that appears in the New York Times today. The full text of their letter can be found here. Organized by Grahm Coop, Michael Eisen, Rasmus Nielsen, Molly Przeworski, and Noah Rosenberg, the signatories include many of the leading researchers in human genomics (a full list of signatories and their affiliations can be found here).

Several of the authors are people whose research Mr. Wade cited approvingly in his book as supporting his thesis, such as Dr. Sarah Tishkoff, Dr. David Reich, and Dr. Noah Rosenberg (lead author of the 2002 paper that Mr. Wade uses as the primary evidence for his conception of genetically distinct races).

According to Michael Balter in an article appearing today in Science:

The letter was spearheaded by five population geneticists who had informally discussed the book at conferences, says co-organizer Rasmus Nielsen of the University of California, Berkeley. “There was a feeling that our research had been hijacked by Wade to promote his ideological agenda,” Nielsen says. “The outrage … was palpable.”

The authors don’t mince words:

Wade juxtaposes an incomplete and inaccurate account of our research on human genetic differences with speculation that recent natural selection has led to worldwide differences in I.Q. test results, political institutions and economic development. We reject Wade’s implication that our findings substantiate his guesswork. They do not.

We are in full agreement that there is no support from the field of population genetics for Wade’s conjectures.

This letter is highly inconvenient for Mr. Wade, making it clear that the senior researchers in the fields from which he’s trying to marshal support categorically reject his storytelling and bad science. Nor can he continue to make the (untrue) argument that critiques of his book are largely politically based, and conducted mainly by social scientists. A strong blow has been dealt to scientific racism today.

 

For further reading, check out the Nature blog on the subject: http://blogs.nature.com/news/2014/08/geneticists-say-popular-book-misrepresents-research-on-human-evolution.html, and Jeremy Yoder’s post: http://nothinginbiology.org/2014/08/08/population-geneticists-to-nicholas-wade-you-know-nothing-of-our-work/

 

UPDATE: Mr. Wade has issued a statement responding to the letter.  He starts out reasserting the position I claimed above that he can’t continue to hold:

“This letter is driven by politics, not science. I am confident that most of the signatories have not read my book and are responding to a slanted summary devised by the organizers.

As no reader of the letter could possibly guess, “A Troublesome Inheritance” argues that opposition to racism should be based on principle, not on the anti-evolutionary myth that there is no biological basis to race.  Unfortunately many social scientists have long denied that there is a biological basis to race. This creed, prominent throughout the academic world, increasingly impedes research. Biologists risk damaging their careers if they write explicitly about race.

 

In yesterday’s post on the subject, Mr. David Dobbs described who several of the authors are:

Those signers include

  • Noah Rosenberg, the lead author of a 2002 paper that Wade leans on especially heavily, ”Genetic Structure of Human Populations,“ as well as at least two other authors of the paper.

  • Yale’s Kenneth Kidd, who is one of the world’s most respected population geneticists, a central figure in establishing the field, and another co-author on the 2002 Rosenberg paper.

  • Stanford’s Jonathan Pritchard, another co-author on that paper and the researcher whose lab designed the ”Structure“ genetic analysis software that created the ”clustering“ data Wade says supports his argument.

  • Sarah Tishkoff, lead author of a 2009 paper on ”The Genetic Structure and History of Africans and African-Americans“ that Wade cited extensively as crucial support.

  • Jun Li and Richard Myers, the lead and senior authors of a 2008 paper, ”Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation,” that, as I noted in my review, Wade misrepresented as supporting his argument.

 

These and the other signatories of the letter are the leaders in the field of human population genetics. They do not shy away from research and writing about human genetic variation. Mr. Wade is wrong to imply that they are being intimidated by cultural anthropologists. The fact that they agree on a single statement (on anything) is extraordinary and should be treated seriously.

Further, I suspect that more people on that list have read his book than he believes, simply because I’ve talked to them. In fact, Jerry Coyne, one of the signers of the letter has read it twice. (I encourage you to read his thoughts on the subject at the link above).

Disturbingly, Mr. Wade appears to be adopting the methodology of his “HBD” followers in claiming that evolution requires acceptance of his view of race. The data do not support that position, and saying so doesn’t make any of us anti-evolution, no matter how loudly he says it.

He goes on:

These attacks have included repeated assertions that the book is scientifically inaccurate, a charge for which I have seen no basis. In the same vein, this letter issues general charges without supporting evidence.

True, the letter doesn’t go into a detailed scientific refutation of his book. But there’s hardly space in the letter section of the NY Times to document his numerous errors, and many of us have done that already (For example “The troublesome ignorance of Nicholas Wade” by Agustin Fuentes, “How A Troublesome Inheritance gets human genetics wrong” by Jeremy Yoder, “The genes made us do it: The new pseudoscience of race” by Jon Marks, “A guide to the science and pseudoscience of ‘A Troublesome Inheritance’” by Chris Smith, “A Troubling Tome” by Greg Laden, “On the origin of white power” by Eric Michael Johnson, and “The fault in our DNA” by David Dobbs). If you take a look at the various reviews of his book, you’ll see that they tend to cover many of the same points. Mr. Wade has consistently ignored all of them. His only responses to critics (myself, Agustin Fuentes, Jon Marks, and later Pete Shanks), has been to dismiss our credentials without seriously engaging with the substance of our points, calling us “incoherent with rage”. He’s ignored many other detailed critiques. Given all of this, I’m fairly certain that there are no terms in which 139 professors could couch a critique that would satisfy Mr. Wade. Who is actually being political here?

 

You might find this American Anthropological Association-sponsored debate between Agustin Fuentes and Nicholas Wade illuminating:

 

 

ETA (8/10/14): I mistakenly listed only Dr. Coop as the organizer of the letter. I’ve edited to add the names of the other professors who organized and wrote it. My sincere apologies for the oversight.

Yet more responses to scientific racism

impediment

In recent weeks, Nicholas Wade’s book A Troublesome Inheritance has been soundly criticized on the basis of his misunderstanding (or misrepresentation) of the statistical methods used to study human genetic variation (see Jeremy Yoder’s critique here, Chris Smith’s here, Joseph Graves’ here, and mine here ), his misunderstanding of evolution (see Michael Eisen’s critique here, and Eric Michael Johnson’s here ), and his misunderstanding of human biological variation (see Greg Laden’s critique here,  Agustin Fuentes’ critique here, and Jon Marks’ here ). These criticisms–all from biologists and biological anthropologists– can be boiled down into a single statement: Mr. Wade’s book is scientifically unsound.

His responses thus far (to those of us who published in the Huffington Post) have failed to engage any of the substantive issues that have been raised. Instead, he dismissed our standing for discussing this issue, calling me a “postdoctoral student” (A science journalist should be aware that postdocs aren’t students), and dismissing Dr. Fuentes’ and Dr. Marks’ research background and credentials (as if biological anthropologists were not scientists). I have not seen any response yet to the numerous other critiques from biologists that have appeared elsewhere (many listed in the previous paragraph), which raise many of the same concerns.

Mr. Wade may feel that he can ignore the substantive critiques of his book by scientists. But can he do the same for fellow science journalists? David Dobbs’ review of Mr. Wade’s book appeared in the New York Times Book Review this past Sunday (the online version can be read here). It is not favorable.  Mr. Dobbs calls the book “deeply flawed, deceptive, and dangerous.”

In discussing the study (critiqued by most of us above) that Mr. Wade claims supports the genetic basis for three (or is it five?) “continental races”, Mr. Dobbs notes that the paper itself

“directly contradicts Wade’s argument. Yet he baldly claims the study as support.  And he does this sort of thing repeatedly: He constantly gathers up long shots, speculations and spurious claims, then declares they add up to substantiate his case. The result is a deeply flawed, deceptive and dangerous book.”

Mr. Dobbs elaborates on this in the companion piece on his blog:

“Wade demonstrates how a lucid, well-written, selective presentation of evidence — eloquent, elegant cherry-picking — can convince smart people of pernicious ideas that seem scientific, but which science does not support. Much of the sleight of hand in this book will not be evident to people who don’t know the field. In some cases one has to read a specific paper cited by Wade to recognize that he thoroughly misrepresents its findings.”

I encourage you to go read both of Mr. Dobbs’ critiques. It will be interesting to see how Mr. Wade responds.

**************************************
Update: Here are a few other critiques worth mentioning:

A Troublesome Ghost by Dr. John Edward Terrell

In addition to the post I cited above, Dr. Chris Smith also takes on Wade’s mischaracterization of
the genetic basis for violent behavior in different populations.

He also discusses in detail Wade’s repeated assertion that human evolution has been “recent, copious and regional”.

And if you’d like to listen to an interesting discussion on race, genetics, ancestry testing, and human biology, here’s an appearance by Agustin Fuentes on the Center for Environmental Health podcast.

Nicholas Wade’s troublesome approach to scientific critiques

Nicholas Wade has a problem. Although his new book, “A Troublesome Inheritance: Genes, Race and Human History”, appears to be selling well, he’s not encountering the praise that he expected from biologists for “courageously” freeing them from the “intimidating social scientists” on the subject of race).

Plus ça change, plus c'est la même chose
Plus ça change, plus c’est la même chose

 

 

What is he arguing? I go over this briefly in my recent piece on the Huffington Post, and in much greater detail here on this blog, but essentially Wade is using patterns of human variation in populations as a justification for claiming that race is a valid, biological taxonomic category. He goes on to speculate (and that’s really the only word for it, since his claims are unsupported by the preponderance of scientific evidence) that these racial differences determine behavioral differences and thereby explain why some civilizations have historically been more successful economically and politically than others. (You can guess which races he’s talking about; his speculation happens to coincide neatly with traditional stereotypes.)

Wade claims that all critics of this viewpoint are motivated by political concerns and ignore data showing that races are genetically distinct enough to be meaningful taxonomic categories of humans. His book relies particularly upon one genomics study to support this point. In his words (emphasis mine):

 

Raff and Marks take issue with one of these surveys, Rosenberg et al. 2002, which used a computer program to analyze the clusters of genetic variation. The program doesn’t know how many clusters there should be; it just groups its data into whatever target number of clusters it is given. When the assigned number of clusters is either greater or less than five, the results made no genetic or geographical sense. But when asked for five clusters, the program showed that everyone was assigned to their continent of origin. Raff and Marks seem to think that the preference for this result was wholly arbitrary and that any other number of clusters could have been favored just as logically. But the grouping of human genetic variation into five continent-based clusters is the most reasonable and is consistent with previous findings. As the senior author told me at the time, the Rosenberg study essentially confirmed the popular notion of race.

 

It’s not a question of logic, but rather what the data show. Rosenberg et al. (2002)’s paper did not analyze or identify just 5 clusters, but rather it considered 1-20 clusters. What Wade is omitting from his paragraph above (and also from his book) is that Rosenberg and colleagues never presented any statistical justification for the choice of 5 clusters over any other number.

Here are the specifics of my criticism, which I posted in response to a commenter on my blog. (If you’re not interested in the statistical refutation of Wade’s argument, feel free to skip this paragraph. I hope Wade takes the time to read it, though). Continue reading

Nicholas Wade and race: building a scientific façade

“…for he has no right to give names to objects which he cannot define.” –Charles Darwin

Do “races” exist as meaningful biological categories? Physical anthropologists and human biologists have been studying race (i.e., blacks vs. whites, or Europeans vs. Asians) for centuries. For most of that time, they subscribed to the perspective that race was a taxonomic category, and they sought to identify the biological characteristics (such as cranial shape or skin color) that characterized and defined these different groups. This perspective assumed that each individual was a member of a single racial category, that the differences between racial categories were biological, and that these categories were predictive of other traits (such as ancestry, temperament, intelligence, or health).

But it gradually became clear that this understanding was not scientifically sound. Groupings of people by skin color did not produce the same result as groupings of people by skull shape, nor of blood type. Furthermore, as scientists began to study human variation with the tools of genetics (in the process creating my fields, anthropological genetics and human population genetics), it became apparent that human genetic variation does not divide humans into a few discrete groups. There are virtually no sharp boundaries, either with physical features or with patterns of genetic diversity, that show where one population “ends” and the next “begins”. Continue reading